PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 503aa    MW: 57417.9 Da    PI: 6.5158
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31157.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.15.9e-0891184290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 f  +YA + GF+v ++++  +    e+ ++    ++ gk+e++ +          +  ++r+++++ t+Cka ++   + d+ +++++++leHnHel 
  Dca31157.1  91 FIISYALKKGFEVFTRSNALK---AEFRNAGVIRKCGGKKESRYHMmerlclackKGGRKRSEKSNVTSCKAYFEGAIQ-DDGFVIKTVHLEHNHELD 184
                 5568*********99988777...344455555555566666555577899999877888899999*********9999.999*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-691185IPR004330FAR1 DNA binding domain
PfamPF105516.7E-32305398IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSSNNDGWFD LNEYYDEEFG GSGGYVEEIE ENDTELNNNE SAGNSIDEVV LADGSPNPVE  60
PSGNAVEGAN DDIGDPTVGM VFPNCDSFAE FIISYALKKG FEVFTRSNAL KAEFRNAGVI  120
RKCGGKKESR YHMMERLCLA CKKGGRKRSE KSNVTSCKAY FEGAIQDDGF VIKTVHLEHN  180
HELDPGNSRF KVSARTITDY FKERIVLNDR AGIPITKNFN AMVIEAGGHE NLPFNHRDLR  240
NLVNLERRLK RINGDAAALE QYFVKMKTDN PDFFYAIKKD NEGRLQNVFW ADARCRAMFK  300
VFGDVVTYDT TFLCNRYRLP FSPFIGVNHN GNSICFAAAL ITNENTETFI WVFERWLECM  360
GKAPPVILSD QDKAIGKAIE TVFPGSKHRL CLWHMMRNAV KNLGRYGFWK ELCSDLKAVV  420
HDTLSEEDFE QGWKVMVEKF GLQENAWIKE SYNIRRRWVP AYWKGTFCAG MSSTQRSEQS  480
NRFFKVRVSL ETGLRNFMTQ FDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-76FAR1-related sequence 5